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| Aflevering | Eerste uitzending |
|---|---|
| S06E01 - Legacy (1) | 03/10/2000 |
| S06E02 - Legacy (2) | 10/10/2000 |
| S06E03 - Florida Straits | 17/10/2000 |
| S06E04 - Flight Risk | 24/10/2000 |
| S06E05 - JAG TV | 31/10/2000 |
| S06E06 - The Princess and the Petty Officer | 14/11/2000 |
| S06E07 - A Separate Peace (1) | 21/11/2000 |
| S06E08 - A Separate Peace (2) | 28/11/2000 |
| S06E09 - Family Secrets | 12/12/2000 |
| S06E10 - Touch and Go | 09/01/2001 |
| S06E11 - Baby, It's Cold Outside | 16/01/2001 |
| S06E12 - Collision Course | 30/01/2001 |
| S06E13 - Miracles | 06/02/2001 |
| S06E14 - Killer Instinct | 13/02/2001 |
| S06E15 - Iron Coffin | 20/02/2001 |
| S06E16 - Retreat, Hell | 27/02/2001 |
| S06E17 - Valor | 13/03/2001 |
| S06E18 - Liberty | 27/03/2001 |
| S06E19 - Salvation | 10/04/2001 |
| S06E20 - To Walk on Wings | 24/04/2001 |
| S06E21 - Past Tense | 01/05/2001 |
| S06E22 - Lifeline | 08/05/2001 |
| S06E23 - Mutiny | 15/05/2001 |
| S06E24 - Adrift (1) | 22/05/2001 |